NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10002016

Scaffold Ga0209298_10002016


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10002016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12851
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F008814Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000201613F002060N/AMNLDLTTIIIAISAAILSGMGTAIIAGLNENKREKNRQKEREQDLLKIELKDLKIELYQLEKELTEWKDKYYKTIEELILIKSELENALRDLNSLDDHIN
Ga0209298_1000201614F000671AGGAGGMDKVLCYSCNKTKNKLSLKKSVLVPINLLMCETCTISKFEPRWLIILAGRQLGSESVKDFVLKKRYVGTEITASELLI
Ga0209298_1000201616F000473N/AMYIDKSKDHFKYGINQWNGEPNKPVFYTQEMAKALRGISKPVNNLQMDVVKYPEFLALRLYEDNFIQFEGTKKEMVIEYVSKVKKLIESYGVRCELEGVPSERVLR
Ga0209298_100020168F008814GGAMANMTVLEEIIKEIGEELYQKWYNGLAIEDRTEESSKAMATNAGETAVWVIQTFMNKFNAAADELKDT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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