Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10002548 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10002548 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11297
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (89.47%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11297

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (89.47%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001715	Metagenome / Metatranscriptome	647	Y
F067672	Metagenome / Metatranscriptome	125	N
F078640	Metagenome	116	Y
F085621	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000254812	F085621	AGGAG	MGRFKDIAIEMAYRADQDCPNDDELRVLMENFKPTPEELQAIHCILDELQAHETSLPAISVQPEIKVYLLMKNGFPYRSYMDRALAFYECWVCTEGDMHAETPDDYYVVEIMHDTSTYTG
Ga0209298_1000254817	F078640	GGAGG	MMYENDMSHMVSVFVPIDRDKPCLPYDEFIVDSGRHPRLQEHGDHFYAKYVFPNGKKVSVISGSMFYSRIDAPYEVMLDDEDDPYGYQTDEELMILLAKAIGDTHD
Ga0209298_100025486	F001715	GGAG	MEQIMPYIEENIPLPKNASDAFPDLSPSEELTMRANVVKLMSDLTGHPLAPTQENADQAREIAKQMISDPTLRPDFSKYPNETLAMLAGMVAQMNVSIVEELSDLKMYVVNKLVAEIESAKDAKTRVAALSKLGEIDGVDAFKKRSEVTHKIMSIEEVEKELLDTLTKLEDKAIDVEAREVVRGESPLRRDVEQNG
Ga0209298_100025489	F067672	N/A	MGNSALRHSETDHSRRTIIATSKKTPIANAITSVDVTPIASLTDLGYRQGATRDALKNQARFAIANIVGFPESLDDASKELLFKGYMMRYNDNNPPVTYGVVDGNYLVLADLDKDAQAKVKEKVEIGVDVVFSYTQQEYGKFKASDPAKYAAYSVWREGFIDYRSGCLSDLKAAARKELKKISGDTERAPNLDFGEYIERKDGTATIGVLVDMQTRCRTAHKRKDATADLERLNKAIAAFKAIWIG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10002548

Overview

Ecosystem & Geography

Associated Families

Sequences