NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10005866

Scaffold Ga0209298_10005866


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10005866 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6948
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F000852Metagenome / Metatranscriptome860Y
F007644Metagenome / Metatranscriptome347Y
F014250Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000586611F000450AGGCGGMGDRANFGFVQSNGETIVLYGHWAGHNMLGKLADAVIKARPRWNDESYATRIAISRLIGDEWNMETGWGLSVNNIQDNEHKIAVVDFKQQTFSLHEEDERNNLDNKVNGMKNDAIFTMDLSVFCEKYALEEILV
Ga0209298_100058664F000852N/ALKGDNQMATKREYLKSKGITVGVRGRFSGAAKVALAEAEKNGIKFTADVKTK
Ga0209298_100058666F014250N/AMRDINTDFHPRLQKLVDMGETGTNILHGELKNLMLEAEKQLELAQETEDNSGEAMDSMERTYWEGQMDALTEVYAMTYNLSFAINERTQKNEFNRTI
Ga0209298_100058667F007644N/AMKLHLISLEQDLEMNPESINVIDIPGQIYATEHLLSVANDMMSS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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