NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10017439

Scaffold Ga0209298_10017439


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10017439 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3650
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F015330Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100174393F001915AGGAMEWSLADPRFDVDDIVEMADSFFGHEADGIVTRSRAVFRHRVTVACTEQLFNKSREFIAVCRDEPKTLPMYDMNGMVMGSHSVQPLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLSVRNRVRLVNEMIDQHILWAHTWGVPIVCSTSIRSEHDGFMRIHAKRGFTVNGSYAWIRTEKGMECLTKK
Ga0209298_100174394F015330AGGAMSDEKVVELKTKNAVGRPKSVVNRVTEYGALFNQLNAAHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV
Ga0209298_100174399F001059AGGAMATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKIPSEFVTEENPYVDKKDLIPVDELKVLPPRNKDLPEPDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELLMRRADGTFTERGRGLYTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA
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