NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10021575

Scaffold Ga0209298_10021575


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10021575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3215
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F033005Metagenome178Y
F066714Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100215751F066714N/AHATGRAVDLSYRKSEKHPKVGRKEALVFIDKLVANANDLGLQCILDYFPEPQGRAWRCDRYAWLKYDKSTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKDTPIP
Ga0209298_100215754F002794GGAGMSEGVAWNQGELSEETRRMVLEQAMQTNHTMAMFDLIDDIMAVKKNPHASIIQRLKGMKNSLSLEDPMPLHDVTTLNLAIKALQAHS
Ga0209298_100215755F002421AGGAGMKTCTICKETIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSANARWTRPQQNEVDAAIVQVARTKGFFTSDDIWKHLGDKFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGI
Ga0209298_100215758F033005AGGMTRKLTEHDTTIYKQARAELLRDSPICHWCKKNTATELDHLIESDKGGTIEDGYVAACKPCNSARGATYRNKKLANAKQNREKAINDFLYSAQL
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