NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10025156

Scaffold Ga0209298_10025156


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10025156 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2935
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004790Metagenome / Metatranscriptome423Y
F025265Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100251564F004790N/AMEALTPETVAWARKVGLPPDRVAFLLACPKYTVSKGNRKSDKVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLLTARQRRDEMLAAFDSGQPIPHLNNK
Ga0209298_100251566F025265N/AFFVDDKGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYLQYLEPACGQTILVGVEVEANGEYNGRPQYKYKMTYPKGSQKPTVADTLPDAPPF
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