NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209299_1066265

Scaffold Ga0209299_1066265


Overview

Basic Information
Taxon OID3300027974 Open in IMG/M
Scaffold IDGa0209299_1066265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1469
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011151Metagenome / Metatranscriptome294Y
F014135Metagenome / Metatranscriptome265Y
F022413Metagenome / Metatranscriptome214N

Sequences

Protein IDFamilyRBSSequence
Ga0209299_10662651F014135GAGGMRNGITLDFDTADKITLLVLKDQLKYLRKELEDYKEGKWLHPEDVVNNAKIIEALELLIPYYGGTV
Ga0209299_10662654F022413AGGAMLLAKPKLTNTLDSKQFKSFAECQEYLEAYTDISMSLVEWIALGKILVAETMTTPEFYPKKVKGQIVMTKFDIEEFA
Ga0209299_10662655F011151GGAGMTGFQSKRKMAKDRFKVYCEWCHDWHYTDEVEMLNIEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE
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