Scaffold Ga0209702_10015388

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209702_10015388

Scaffold Ga0209702_10015388

Overview

Basic Information
Taxon OID	3300027976 Open in IMG/M
Scaffold ID	Ga0209702_10015388 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7084
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (77.27%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.605	Long. (^o)	163.163	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1001538810	F021020	GAGG	MADVINLRNTISTNNYDLNIWDRRGYETEYEEEGWSIEVYKYNYMGAPFGSGDYFETITLAPTESKRLTLGWGTDLGGDYAPDDDFWLDKDTFLELYTDIPERVANLLWALPHYEQSLDIDPSLAVQ

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