NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209284_10055827

Scaffold Ga0209284_10055827


Overview

Basic Information
Taxon OID3300027983 Open in IMG/M
Scaffold IDGa0209284_10055827 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2161
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018370Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0209284_100558272F018370N/AMIHILWCTIRPNQFISTHKQWIDKSKNPDNIKTHVAVNWLSHEEHISEYLDLDNNYIKTLNTDKIGVCYPSYELSSNLGKFEKYDDDDIIVFASDDFIPPNNWDLYLINKLKDKGDVGLMVRDGYQLPDSSNMLHPAITIPIMTYGCLKRMNMVIYHPSYNHMFSDCELYENLKDLNLLYDDRLNDETIFEHLHYAAGKREADQADQAYNSKWVEDEITWNKRKNMPVKERILV
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