NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209629_10269931

Scaffold Ga0209629_10269931


Overview

Basic Information
Taxon OID3300027984 Open in IMG/M
Scaffold IDGa0209629_10269931 Open in IMG/M
Source Dataset NameCubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1670
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000058Metagenome3020Y
F000152Metagenome1897Y
F001072Metagenome786Y

Sequences

Protein IDFamilyRBSSequence
Ga0209629_102699311F001072GGCGGMFVCCDCCVLSGRGLCDGLITRPEESYRLLRVVVCDQETSKTRR
Ga0209629_102699312F000058N/AMYKYRGADKSLARPTSGCILYDDENISFYASLVMYINSTNISPVMIINKIYQNQNLLSL
Ga0209629_102699313F000152N/ALRNSLPIDMLLSAFSVLVVAQSSSEVPEGLMNNPV

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