Scaffold Ga0209168_10000135

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209168_10000135

Scaffold Ga0209168_10000135

Overview

Basic Information
Taxon OID	3300027986 Open in IMG/M
Scaffold ID	Ga0209168_10000135 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	81124
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (72.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001520	Metagenome / Metatranscriptome	679	Y
F005064	Metagenome / Metatranscriptome	413	Y
F016192	Metagenome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_100001351	F005064	N/A	AACVPASTTACLIDSVLANDGNPAGGGKSGYKFTTGAGTVAGGINVGYVALAVPMTVNQTGIRAFCAEEDGVVRVDPAGVCSNTEAGVLTFNPLNQ
Ga0209168_1000013510	F016192	GGA	MKTVLLVLILFCAAGAFGQAALSNQPMVLEFPDHPQHASVTPMACEHPIVGGAADTYTFAHGERPLWEFGPVSEPVPLGDVARAYRKEKAVAKKAGVVLEKQGS
Ga0209168_1000013552	F001520	AGGAG	MNSVKFLFAAYIATWVIHGVYLGSLVRRFSHLRKQLKELGKGK

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