NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209168_10000166

Scaffold Ga0209168_10000166


Overview

Basic Information
Taxon OID3300027986 Open in IMG/M
Scaffold IDGa0209168_10000166 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74057
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000534Metagenome / Metatranscriptome1044Y
F000978Metagenome / Metatranscriptome815Y
F001318Metagenome / Metatranscriptome724Y
F003854Metagenome / Metatranscriptome465Y
F011701Metagenome / Metatranscriptome288Y
F019104Metagenome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0209168_1000016618F000978N/AMFAQTVGVRPRQKSGANRICFCPQCAVSLAMGMPPEGALNMVAWEMIRELVSAEPSLNEAAWESLRGMAGLLTAGDEGETSKRYRRAG
Ga0209168_1000016635F003854AGGMPGGGLMLAARHRLHHNQYFEFHPLHTLFSLLGALILFGMLIWFLAIPAK
Ga0209168_1000016650F019104AGGAGLRQRQKVLLTAVLILVFGLVSLARTAKLTGKMVGYDFMHHASKAASDTLNEEVIVLETPNEKQKYVKVMFSSLGTTQIEPKYFDGTQPLEVNVLRDKTCDEKAPTFVSQVSTEQIAGTYLLTDAYKAQPPARIKNLDCYAAIYKKKK
Ga0209168_100001666F011701AGGAGGMQFQRESRAWLVCILLTAFLLASGAARANSGREFSGYFDVSHVQEEGELVRVTLHLKLFNHSESDAKSVIVALFDSSPAMTLRGNFSPVKVWKSHQFIEMSQEFTVTKREFKEWMAAPAQPNLVILFQDSTGASWQKGAQISRRPLVRTQD
Ga0209168_1000016664F000534AGGAMPQEISVSYQAIKSKVYRLIDALVVGEKSEAEVQESVRRWWALIHPADRPVAQKYLLMVLGRSNSAIDAMGTELLTVSGCETVSTRMTEPVLSKRMRLMDRTLKENSVRPAI
Ga0209168_1000016665F001318GGAGGMRKWALAVTLLVLSSPALAQTTGSLNTQAGQGGSRSQGTWQDAGPNERMFFPKDMLWGWAQFDLAPPHNEIDPNLCAGNSYVYGGANAPCNMFARYMISGILEVRPFGRGPLRRFMVFGAPAFLFGKNVPKTLYTWSPDAIGIEHSWGAGIYLNKGFEFRVTQHFLFDRLGARDKNLGAADLGNNGPWGRYMSLGVRKTFGTRRW
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