Scaffold Ga0209168_10087978

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209168_10087978

Scaffold Ga0209168_10087978

Overview

Basic Information
Taxon OID	3300027986 Open in IMG/M
Scaffold ID	Ga0209168_10087978 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1613
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017111	Metagenome	242	Y
F052529	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_100879782	F052529	GAGG	MKKITGVVLFASLLWFGCMAQSGPSDSEEPPKQAANATDTGPVPLAYPYAISTAPHFAVFVEFPRADSIRRIALGDSNYFLAEADKTDPHYAIIKQIRASASKGKTPVETNMLVYMASGRVVNIMLKGGKLEEAAYSVDYPVPNLQAKKDLPDPPPVPKQALEAARQNQERSQLAEKMIGEVKDSPKSQRGVIAGALDLRLYTIKRLGALALVSFDVENTSSDVIDLETPQVNLVTVAEKDKNRKKGAVKTEPIALTLSMASPKQLPPGERATCLVAFKPPVHDSDQQIVLSVSNRAMADHPATYRIE
Ga0209168_100879783	F017111	N/A	TVATLNGSGAAVANTAAQQEPDNAEKLAFVNTFLGRFVNIDPIAVKRDTTLALNQMTYGLRQQILAKLNQEHFVDTVRDNNVTSTLAVKSAELVSGDPYTAIVFGRKRLTTLINGRENEKELLVKYTIRLAPVPRAAVNGWTGLEIADYKEEVLQQ

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