NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247683_1020582

Scaffold Ga0247683_1020582


Overview

Basic Information
Taxon OID3300027991 Open in IMG/M
Scaffold IDGa0247683_1020582 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003157Metagenome / Metatranscriptome504Y
F007372Metagenome / Metatranscriptome352N

Sequences

Protein IDFamilyRBSSequence
Ga0247683_10205821F003157N/ARESAAMSGFARFGGLDRLDWLMILASVLLGTIAKQHHFLDLPDWLLEWVSPFLLMAFGYKVRRKITEVVASRRDRAKDTRDE
Ga0247683_10205822F007372GAGGMRSLVPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQAKEGPEGSTNAKAKWFDRYDVLMILTVIIIYSSMSGLLRRAG

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