NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228674_1134010

Scaffold Ga0228674_1134010


Overview

Basic Information
Taxon OID3300028008 Open in IMG/M
Scaffold IDGa0228674_1134010 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)838
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004856Metagenome / Metatranscriptome421Y
F052274Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0228674_11340101F052274GGAGGMNNKTLYKRLEDICAREYVVNKLSEDKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRIEEHLS
Ga0228674_11340102F004856GGAGGMSDWIEGTKPKKIEARYSAYLSWDLDELGIDWDDIEDWDLLRADLHITFKDGTQKVYENWQDLDIDYKHNFEEVLILDEDWHEVEGLNG
Ga0228674_11340104F004856N/AYSAYLSWDLDELGIDWDEIEDWDLLRADLHITFKDGTQKVYENWQDLDVDYKHNFEEVLILDEDWNQVEGLNG
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