NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265354_1001387

Scaffold Ga0265354_1001387


Overview

Basic Information
Taxon OID3300028016 Open in IMG/M
Scaffold IDGa0265354_1001387 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3497
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F006125Metagenome / Metatranscriptome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0265354_10013875F000696AGGAMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTETDTSLQVSITDATAPPNQLPTNLLVPVKIWERPNCSTDDFLEMVDLTQHGGLPSREQDTTLSVWEWRADGIYFLGATQDTQIRLRYSKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF
Ga0265354_10013876F006125GAGGMPITITLLPSNEDGSGSNLFYAIGTLTFSGSYPTGGDTMDFTTVADKLPSDQIIQVFADSQNGNSGYYVPVQGTALNNWKLKAFSGGGTELSAGAYPGSVTGDIVQVTVTARKLQ
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