NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265354_1003313

Scaffold Ga0265354_1003313


Overview

Basic Information
Taxon OID3300028016 Open in IMG/M
Scaffold IDGa0265354_1003313 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1819
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002237Metagenome / Metatranscriptome579Y

Sequences

Protein IDFamilyRBSSequence
Ga0265354_10033132F002237AGGMGATLRKLGLAISYFVSTVYILSILLPSVYCLRQGCKGPAELDAFMPAFGLTPFGAIATAFSLHNAIQHIRKRQSWSWVFWPLAIIFAIVLLSVIVFIVWIIYETASHR

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