NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0265356_1003086

Scaffold Ga0265356_1003086


Overview

Basic Information
Taxon OID3300028017 Open in IMG/M
Scaffold IDGa0265356_1003086 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2131
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9992Long. (o)10.7901Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003215Metagenome / Metatranscriptome500Y
F011166Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0265356_10030862F011166GAGGVKKIYSMCRWGFAWGRGLHREAALDSLRNVLAVIGAGTVLADFSTIKAWLILPMLGVAFLIWFLDYERHFRGTAVEEAKMPGVASGTGSV
Ga0265356_10030864F003215AGCAGMRGTLRTLRAVQWTMLGSILLYAVAGEVLGSGTRATDPSLSYVFTTAGVAIVGIIFVVRRTLVLRSAENLASHPDDSLTLGHWKSGYIATYALCEALGLFGLVLRFTGCNFQQSLPFYVGGFVLLILFGPREPGHSLREG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.