NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265356_1009188

Scaffold Ga0265356_1009188


Overview

Basic Information
Taxon OID3300028017 Open in IMG/M
Scaffold IDGa0265356_1009188 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9992Long. (o)10.7901Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051804Metagenome / Metatranscriptome143Y
F102903Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0265356_10091881F051804N/AVSTTLMIEILGPKDASAKRIRFVEDILRNCIKTLDKDFRKSRIPQMKGFSLRPEKDLRKRRER
Ga0265356_10091884F102903AGGAMFQISKPWVELIEARGRTVKRMNVAYDEEYVAVEVEFEDGHSMNVDIIPAVQIRPQFQHVGTGDARIIRNYKSRISVAGGLKIRSR

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