NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256382_1053649

Scaffold Ga0256382_1053649


Overview

Basic Information
Taxon OID3300028022 Open in IMG/M
Scaffold IDGa0256382_1053649 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)750
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105515Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0256382_10536491F105515N/AGNLIPYASLRNQGIPGILEPETDAFETRSFLDKILERSGLGEKYLEPRRDIITGEPIEKTPSSLYFNPDGILSFSSFVQGPSLVGRQIDVKDNPVAYEIARLRIALTPPTKVRSRVVDLTEFVKDGQSAYDYLMENTGKVKINGRTFQEEVLNQMNSTFYKNRQEGDVNFDGGKEMVIKKVFKAYKDAAYAQMIKNYPEVKDALIKAQKQKYELLGKSKEGESDQINVLLPQ
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Institute for Fundamental Biomedical Research
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