NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256382_1147355

Scaffold Ga0256382_1147355


Overview

Basic Information
Taxon OID3300028022 Open in IMG/M
Scaffold IDGa0256382_1147355 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)750
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005105Metagenome / Metatranscriptome412Y
F012166Metagenome283Y
F057760Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0256382_11473551F057760N/AATITKLQTKIAPDVKLSRSQVVKTLVNEKARKLNGRFSK
Ga0256382_11473552F012166N/AMADLANNSVFLDYKLTPEEKLWKAVLSQGVYEACSKRAQALPLTLGEMASAFQWIDLGNRDFIQVCIYAGYDPAYIYRKAKGKVNKWIPKDA
Ga0256382_11473553F005105GGAMRKICEACMGNGYRRIWKDASESEKIVIQCTKCESTGEVEDEDFNYDYSGIDPDKLQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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