NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265357_1008812

Scaffold Ga0265357_1008812


Overview

Basic Information
Taxon OID3300028023 Open in IMG/M
Scaffold IDGa0265357_1008812 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)995
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9989Long. (o)10.7903Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F006125Metagenome / Metatranscriptome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0265357_10088121F000696N/AKLQRALGNAGGGGFIQDDVLLVVTAVTETDTSLQVSITDATAPPNQLPTNLLVPVKIWERPNYSTDDFLEMVDLTQHGGLPSREQDTTLSVWEWRADGIYFLGATQDTQIRLRYSKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSSYTPF
Ga0265357_10088122F006125GAGGMPITITLLPSNEDGSGSNLFYAIGTLTFSGSYPTGGDTMDFTTVADKLPSDQIIQVFADSQNGNSGYYVPVQGTALNNWKLKAFSGGGTELSAGAYPG
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