NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000016

Scaffold Ga0247723_1000016


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000016 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106810
Total Scaffold Genes164 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (78.66%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Associated Families16

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F004092Metagenome / Metatranscriptome453Y
F004475Metagenome / Metatranscriptome436Y
F007115Metagenome / Metatranscriptome357Y
F009882Metagenome / Metatranscriptome311Y
F011386Metagenome / Metatranscriptome291Y
F018352Metagenome / Metatranscriptome235Y
F020910Metagenome / Metatranscriptome221Y
F029106Metagenome189Y
F029439Metagenome / Metatranscriptome188Y
F038549Metagenome / Metatranscriptome165N
F067413Metagenome / Metatranscriptome125N
F084151Metagenome / Metatranscriptome112Y
F084246Metagenome112Y
F093770Metagenome / Metatranscriptome106Y
F097334Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_1000016123F029106AGGAMNRKQKLLIAIGIAGAVGITYVISALKGLPEVFDWEDDINE
Ga0247723_1000016124F000264N/AMAGKLYTSEIWLRKRFLMDKKSPEEIARECGASVETIYVYLAKFGLRKSKR
Ga0247723_1000016130F004092N/AMAKEFTVYPGRFPCKKCGVEVTSLRYWGESGDATWMCENKHISKVNLLPPKRKKKDFINE
Ga0247723_1000016151F038549AGGMTLNTYAQTGFPPTFLNAYINSELKVFGLIPDGPNPFQPFFPAQSPINIEDIYNDSVYIKNNPDAIVVMFDRLIRFRPNAFYRNKREQLVYFIYAPDLTKLFDATRVIIECLDREDSAAQDLNAWVATNDIADESGNTITPNVMFHNIKVYQADEARDIAELASARTLFLNKLVIEYDYHTIDTLGTSQRYT
Ga0247723_100001623F097334AGGMPEVLVSNDDITVLGPPSVVEVLVDIGPTGTRGSQVFVGVGDPNIIEIGQTPLLNDLYINTSPGADYGYLYQYVSEPGGNTWIQILELNPTIYSQNHLTTYSSGTAQIVIPIADIVTVTGTPLTSGNFSVQYSISHDNPIASSMTIPTLVAPGDNLVINFSAVEHRNDVDSGPYGDWALLTGEVTTHIFISIVAADEES
Ga0247723_100001632F011386GAGGMKVTITSMQGNTRNINLMSKQEVLQFIELYRSTLKKNQRVKVTCDLVGIDGYLQGVA
Ga0247723_100001633F084151AGGAGMTITYAIWQGSSLLSVNNIATSAKEMDSVIDSLNASHTARVSKYHANVQKVEVKA
Ga0247723_100001634F029439AGGMTTLNTITLEPSHAMASSNTGNPMVFRNTVGNYISRKAYLEMLATSQGVVSHRYLSPNESRWVMNNKKESI
Ga0247723_100001644F093770AGGAMITLNHSINLVTEIDEHKMPSHLLSAFVNLSELEMEKLLRGAFVSALIGEGFLNKLNENNSWAIVKVGDN
Ga0247723_100001647F018352GGAMGKFKESIIGILTCSYCYGNGWQFAGNDIDYDLWACDCNPYNVPADEIQAYHQLFKTKEN
Ga0247723_100001658F009882AGAAGMGSELQDAVTIDKVTVPYNPHLLVTYKAIAGTYAAPEEPTYLTSKVTELEWDLHNGRTNRKALNNLQSTINTLEDQIVEWFDPNYSKEEVLVAICEHFGINPVKQIEVQGTVSFSGTISVPMSELADFDLSNVSIDVELNSYDYDADLNVDEVSVEDQY
Ga0247723_10000166F067413GGAVATTNKDFVVKQGLKVATGVTFPDNTVQSTAALTVGSTFPSSPSNGQLFLYTVTERIYYYLNSEWNPIATYFDAQSEYNGNGMTYPTLFARLNGGAPNTTFTNALPSADGGSPSEQF
Ga0247723_100001664F020910GGAGMQNWAKYTFVCDPFECDSLCEFTARDGYGFPNGVVSMYCPCGREMQYISVEEIESRFYEPVIKVTPPKVVKINSNPYN
Ga0247723_100001672F007115AGGAMRVIKLGISKEEKVATTIGRLLSDYSLDLEAVGKYLAVAQPYLIYCRSLEVLEAAQYNKEVVEYNRLGYYSDRLF
Ga0247723_100001675F084246AGGMTDKIEATSCYTYKVEMIVQILAEDEPAASEQLEKQGGYVTSRKVTLMDSVPLFNGKVVE
Ga0247723_100001676F004475GAGGMTNWTEELSDEHKEQLWDFIVETVKEIREQIAVDIEGTSELWKAKGLNKSRRTTKAFQISAAIARGQNEI
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