NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000025

Scaffold Ga0247723_1000025


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000025 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92955
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (70.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013888Metagenome / Metatranscriptome267Y
F032097Metagenome181Y
F051925Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_1000025100F032097AGGAGGMEFELYHEKDAGPIVRWIATKLLSILHTIEKPLYDYADMYTAVWDDYEDEDTLAVPHNQMGIFDNLEPLPQFEKFENLTEDLI
Ga0247723_100002556F013888GGAMPTVGVLPASGKASRIGGIPKFCLPISDDRCLLQWHVNQMLEVCDEVRVSTRPEWVPIIQNMDMNIKLIVREPSTMSDAIDFMIGDYNDTVLIGMPDTYILNSTKNIYSELMKNQDNADLVLGVWNCPEELRGRVGQVSLRDNKVVASKDKTNDCDYEYLWGTLLFRKNMIRYVDPSRNHPGEQIQEWITSRFNIQAVRNDGEYMDIGTLKGLKDLYRRMEN
Ga0247723_100002595F051925AGGAMIKYEKGFQYDFFAQEWSHDCGACGTELYAPTKKHLEGNFWIHTHSNNCLGGW
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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