NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1000052

Scaffold Ga0247723_1000052


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000052 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65465
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (87.04%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000980Metagenome / Metatranscriptome814Y
F002622Metagenome / Metatranscriptome542Y
F061853Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100005228F061853AGGAGMNKKAMALVGLIVALVAVAYATYNSLSQLKDIDYDLFDTEEDEDD
Ga0247723_10000523F000980GGALICETPAILKASFLCYGSQIKSPETLVNVSGQVYNTRMTTYNKYTWVCTGDCDALIEYTYKDGFGWPNGVTQLTCPCNSTCTLLSVEDVTIPYTDTPINETKGNQMEQTTTPAVPDTYNPNLLVTYKVIRGYSDAEYQTDKVTSIEWDLHNARQAQKTNAVLQGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENEYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0247723_100005260F002622AGGAGMYEDEEDDADSRLAYYLEIGAVSLEGIDESGEMIFAISENAKDIAPELWQSHIEYVDKSLMELYEAGLVEVEYDENLEATIHLSPEGQRLAKEKGLIEIDIPEIPDN
Ga0247723_100005262F000376GGAMSIYQEKAKECKCCGKHVPLPTVLKEYNGVPICPTTFANVVEYKRIWKTIGSRPTGSIRKHFSDYVQQLVEETIDKNEDGTLQ
Ga0247723_100005264F000369GAGMSEIELADHFDRMNVVVSELLKGSNPTQIATITGFKRAEVVELIDEWKSVVHNDTAARDRAKEAISGADRHYAMLIKEAWKTVEDADQAGQLNVKATALKIIADIEGKRIGMLQEIGLLDNAELATQIADTERKQDILVKILKEVTATCPKCKMDVAKRLSQITGIVEPIEIVEEVSGP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.