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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028025 Open in IMG/M |
| Scaffold ID | Ga0247723_1000068 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 60465 |
| Total Scaffold Genes | 82 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (85.37%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019436 | Metagenome / Metatranscriptome | 229 | Y |
| F040526 | Metagenome / Metatranscriptome | 161 | Y |
| F057196 | Metagenome / Metatranscriptome | 136 | Y |
| F059755 | Metagenome / Metatranscriptome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247723_100006829 | F040526 | AGGAG | MLNNINTAIDSFQGIKTKFVETCVKNEELKKPLNTFIAAQSSFAKNVAKSYNDFFTALGMSAYTFDAKKAFTKQ |
| Ga0247723_100006835 | F057196 | AGGA | MYKSKSELRIETEQAIKKFLKQGGSIEVVKSRKGPKMVMRSKVTKQASTGTSGFAVGFPRKSFV |
| Ga0247723_100006842 | F019436 | AGGAG | MFYGKDTIEKNFDVLLQKLEQQELFLFEPMPSYKEGDRWTDEFRIRDGHTKLADGSWVTIHKVTTWVQKMKQDTIEVYDNYQDALRKNRLLVQKNREMEYGLRVAGKALKNSLELTKEMIDE |
| Ga0247723_100006861 | F059755 | AGG | MNYLEKADFDWMDLLNFYERPFRAKLIPAKVWVDLDSYKHDSIGLTNYARKWRTKIEWRNEKSKAKWATNYVAIGGEYSPDDRQITLQIYTKKFNSFPFTDKSWSSFKMRFIQTLMHEIIHFMQYDRRGDEWSNYVVPYKKVGIAKKDEQRAYLSEFDEIQAYAHCVYLDFKMRRPNVDIDTLLNRYKTKRDSSTLHYFLKTFDYDLRNNIATRKIIDQIGKWDRKYNRMT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |