NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000307

Scaffold Ga0247723_1000307


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000307 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33235
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (18.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011226Metagenome / Metatranscriptome293Y
F011227Metagenome / Metatranscriptome293Y
F034850Metagenome173Y
F051129Metagenome144N
F052371Metagenome142Y
F091307Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100030713F011226N/AMAKQISPINVWVNGESKQAEYFQVTCINDNYENSATNYWQLFTKNVDVEGVESMGEQVAQGNLTIQGEQYVEWGDVPAMSINAWIYNWSAEQLNLVILP
Ga0247723_100030714F011227N/AMTLVEMKAAAYDLLANLEYIQKQLQEINQKIAEELQKEKNENG
Ga0247723_100030722F034850N/AMEEDLILGEGEEVEEIIEEVGYTYPEYITCSVEVLTMLETANPMTREEVEKVQEIKQLCLEMLEFSVKSMHGMLFTNDI
Ga0247723_100030727F091307N/AMKKQVTTNVRIPAEWLKISLADIMIMVTATINDAEDYVDVQVREMLIPGYHCINILPQFHSAFYELVEQKCMDAYTFKMDSEYDHEYYCDYVL
Ga0247723_100030734F052371N/ALTNSEELDLERFKLSRTSQPIASLSTALVIDELINGMQKLGVKADKMPNNADMLIMYKSIMEEYPNIKVGEISLAFDLAAKGKLDIEAETYQNFSMLYLHRLLRAFARYGMQKLNEIKPVEESKWQPRFITDDEKIETAFDCYKNFRIWDSIVFGVDVFHILHKQGKIIVEVEDTYDKVLKAMNEKMFEGSRQDKIDIKNKMKDDDYMEHQCYRMAVADYFTKLINRG
Ga0247723_100030738F051129N/AMTQEDEQFIQENIYNFECVKIGFMKNLPLHILVGYEQIYRKYLDPGFILTSWCSSCVSSMMKRLITFWDEYQAKKVLDAEVVQEPVQEPKKKGRPFKNKQ
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