NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000382

Scaffold Ga0247723_1000382


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000382 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30667
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (80.36%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F009529Metagenome / Metatranscriptome316Y
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F025466Metagenome / Metatranscriptome201Y
F089589Metagenome109Y
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100038218F024097N/AMKWLRDRGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
Ga0247723_100038219F096878GGCGGMNRDPLFSVHNSLNGDFVIYLEERDANLDVVEDILAAVPLVQLKGIQSLILHDLKSIDLARLMDKARSAVPDLAIKLASISESEALTLAEQLITAVKVARAMRSQPVATKLELVK
Ga0247723_100038223F089589AGGMSNRLWVDDDGTVVCDQHAGTYLRVAFETKPNGIQHKTPLGTWCAYYTNLNGGKDLVCEVCIPWNSPNHPYNQMNAGA
Ga0247723_100038225F020909GGAGMITKRGKKVRAIAIAVGIVLIWQVASNLWWVGIDSPNAEFLGWCWGSMSECVVL
Ga0247723_10003823F009529AGGAGMDCTICQRATKNEGACLTCELKVKACLTELPALQYEAGYHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHILHGWEVPIRIGRGLTPPAFVDREPTTDAEVDATCSFHLTHLDFTLLQPWAVEFASDVYGLHAKGRAAAKKFSEQARRIPCPSDECKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIAKRHDIEKRGSLYNFGDILKVVQL
Ga0247723_100038232F025466AGGAMMFDKVKIEAVAKTYLRAAAAAVAALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK
Ga0247723_100038243F004344AGGGGGMDGLSIKIVTNDDVEKVYSLRPRIIVDFEQKYNKGLAKLIGEEQKLEHIYYLAWLALKHNGNIIKPFGGDFLDTLKEVSLVADPNSESTETA
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