NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000532

Scaffold Ga0247723_1000532


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000532 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25960
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (75.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001097Metagenome / Metatranscriptome780Y
F002099Metagenome / Metatranscriptome593Y
F005117Metagenome411Y
F058568Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100053218F001097N/AMTFNWPTNDSERIGTLQGLRSPRVDKALQSQETDDWLKASVALVAGCVAGLATNQRRVRYFGFETTHEQDSR
Ga0247723_100053232F000166AGGMANIPTPQDVEYFAQSVKKWQQLLSLGDWRIEKGIKPAKNAMASVEFNDAARLATYRLGDWGAEQITPSSLEKTALHELLHVFLHDLMVTATDPKASDDQLEAQEHRIINLLEQLLTTKDSNGRS
Ga0247723_100053235F058568AGGAMPPIRVEKAGEIILKISALSTSLAHRPNIKLITMANTEIHRVVLTISVTYSVNLSLVSGDVLGVGFLVIQGHQFVVSDW
Ga0247723_100053236F005117N/AVKISYDKWYPIVQPNPPMQSKVFAKRVERLDAERAVQVQIDQQVKKFHQYEYEIYEYRMRQITINIDITNLKRQIDALV
Ga0247723_100053237F002099N/AMRWIIAIVLTLALQSTGKDLCSVREFYGIAYTIHNPSERHQQMSAWLTNHQYLCKSSDFVVIWNNLSEWAGSADSALLRHKVIQGYKNALDREKK
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Institute for Fundamental Biomedical Research
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