NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000671

Scaffold Ga0247723_1000671


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000671 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22389
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (89.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F000346Metagenome / Metatranscriptome1253Y
F000843Metagenome / Metatranscriptome864Y
F015972Metagenome / Metatranscriptome250Y
F027746Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100067111F000324GGAMTQAVSPKHQVTYDGASVNVYHVNKGEGLPRHDHTYAHLTICHAGSCVIRKEGIEKIIDKNTQPINLKAAEWHEIEALEDGTVFVNVFSEGKY
Ga0247723_100067112F027746AGGMTYGIYPNSTPEFRMLHKADGTMAMQVRYINTPMGYVGKWLDVKTEKENDTSSQPETSSH
Ga0247723_10006712F000843N/AMPLHHVHPNYLPNVWPVALPLLKKAMDLEPGSHSEQFIEYSIRTGKTHLLVWEEPDEGITGACTVEFIDYPMERVAHVNLMGGKGIVRDYVFEEAKNFMRLNGAKKAQCWARGTLVDMYKKMGMENTHQVMRVDL
Ga0247723_100067122F000346AGGAGMDKKDLKQDKKMIAGAVHKHEKKLHPGKPMTKLAKGGVTSKAMKAVGRNVARANNQRGG
Ga0247723_10006714F015972AGGAGMASKGVSAPRLPAAPVEYDQRFVDALLSILRQYFNALDNPGPIIVSTQRTPASGGFPAQVISALSCSTPTLAGAPAISLPTQADFANLRSGDIYYDTSGGAASSYPLRIKA
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