NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000811

Scaffold Ga0247723_1000811


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000811 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19978
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (80.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001097Metagenome / Metatranscriptome780Y
F001713Metagenome648Y
F002099Metagenome / Metatranscriptome593Y
F067527Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100081111F001713AGGAMKYEFDTTTGEGSVIVTVVMEYERDEEGTYNENISDVIYEKVSLMGLFTDAQYRELEMEGTMRLTSHLLAEADHAKIIAYEHE
Ga0247723_100081114F001097N/AMNFQWPTNDSSRIRTLQGLRSERVDTQIQPKEIDDWLKQSVALVAGCVRGLGTNQRKVRYFAFERQNDEATK
Ga0247723_100081129F000166AGGMTNIPTPEDAAYFAHSVRKWQQVLSLGDWRIEKGSKPAKAAMASVEFNSSARLATYRLGDFGAEKITPDSLDRTALHELLHIFLYDLMCVATDPKSSDEEIEMQEHRVINLLENLLSKDSNGRT
Ga0247723_100081133F067527GAGMIIPSKWYPMVQPRYDFQTVVFDKAAEKVDEDYRLAMKAHKVELAIAELEVELYNKKARVNQLELAMLRPNKLDLYI
Ga0247723_100081134F002099N/ALGDAVRWLIALVLILSLHSTGKDLCSVREFWSIAHTIHNPSERHQQLSMWLTNNARFCRSQDFIVIWNNLSEWAGTADSSEIRAKVIHGYKDALEREKK
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