NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001020

Scaffold Ga0247723_1001020


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001020 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17062
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (75.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005530Metagenome / Metatranscriptome397Y
F006893Metagenome362Y
F022646Metagenome213N
F031868Metagenome181N
F091614Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100102013F031868AGGAGMITVKQEIERLFLESQKNPHIVQTYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTESLYWKQFMKQWKEIWTQETI
Ga0247723_100102014F091614GGAMDTRNNIVNTLASNLRFLRHNTQIEEPITGKVKYMSQRHLAEFMGSATQQVSKFELGTNIMSSYQIFKVSKVFDISIDKLFDAELVKSVYKKTIKQNIYAE
Ga0247723_10010202F006893AGGMENLTIRNISETTKKVLCNHKLYKDINFFEVPHNKVCLAVIRSITELSYNEIGKAYNKSWFTIYASVKDCQKNGLKSFTNKIIDLVKAEVK
Ga0247723_100102025F005530AGGAGMSNYIVTKIDPDFAPETHTVGSSSVQSGVITTGSGLIRIATTTHCHIAFGVNPTATEESMLLPEHHVEIFSFVSGQKVAFIAHGGGAGEINICAVD
Ga0247723_10010203F022646N/AMQIAKANIIHSVKHQKFVASFPCVVCGNNTQVQCCHIRSIPKVGNVGKGIRDDRFCIPMCFTCHTLQHQIGELEFFYKFNINPIAVSLKLAIISPCIKINQAKQEGAYNGKLNYQEHIRNNKKSSLQS
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