NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001292

Scaffold Ga0247723_1001292


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001292 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14906
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (54.84%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F022646Metagenome213N
F070036Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100129212F070036N/ALHLKVRSERDNLYLNDNLANRRLKTLPDIDNLFNPLIVWASDSLICIFGNKRLKTAIDKGYTHIDCLVYRDFDKAVEIGTSIWNTFKQHGLSKVDYLLANDNQGMKNIDRYMVEDKQQFIDIYATHQQILIQEALKSNQDIMETGCGYYSTPLLVEIAKFKGIKLIGFVQDINWARRFDYLIGSHYQQIQIDFKQEIPLTQRFGMCFLDHEQFVRDRIKHLNNILEHTDTVVVHDADKVESFALLHKPYTIEIHKHLTPNTAVIRNV
Ga0247723_100129225F006893AGGMENLTIKNISEITKKVLCNHKLYKDINFFDVPHNKICLAVIREITELSYNEIGKAYNKSWFTIYASVKDTQKNGLKAFTNRVIDLVKAEVK
Ga0247723_100129226F022646N/AVQIAKANIIYSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKVGNVGKGIRDDKFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKIASISPCNKINQAKQEGAYNGKLNYQEHIRNNKKSSLQS
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