NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001300

Scaffold Ga0247723_1001300


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001300 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14840
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F001872Metagenome / Metatranscriptome623Y
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100130015F001872AGCAGGMNEFIKQVLHHSNNAVWNNGSWGVRDVRSKPGTMSVHATGRAVDLSYRGGERHANASRKTALPFVELLCAHANDLGIEMVIDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0247723_100130018F002794GGAGMSEGVSYNQGELTEETRKMVLDSTLNANHSMAVFGLIDDIMAISKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAHS
Ga0247723_100130019F002421GGAGMKTCTICKGSIAYPEITGKTHFVCDGRVPARKPFAVGMALSQASADTKWTPEEQRKVDAAIVHVARAKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGLIRNTGELAYAQRGGAHDHAQRLSVWAGI
Ga0247723_10013004F001326AGGMATYSVTNKYLIDNYAVLQLLTPSEIAVGQSITVAGVDATFNGTYTVRALPQYLYIGVDSQGDLLYDYQLPIADQVLYAKTADDVERVAASGTVAYDPVCTWVTAAQVMSYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIESTYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
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