NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001371

Scaffold Ga0247723_1001371


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001371 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14375
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004405Metagenome / Metatranscriptome439Y
F022813Metagenome212N
F041188Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10013715F022813N/AMTILTDTGFPPTFLNRYILSELAYYGLIAESDLLNPSPMVPAQFPTNIEDLYNDNIQIRQTESPVLIVYDRLMRFRPSPLYLHKREQLIYFIYSTDVAKLINSVRVISNALDREDASAQDVNAWNIANPILNNQGDVSIPYNIFFHNTKVYQADESRDVAELASARTLFVNKLIIEYDYHIKTEPDSRYT
Ga0247723_10013717F004405GGAMIDACEATDFLYPMKADIYFPILTQGEYGQPQKDWVYDRTIICNATPVGGLGTEDIKPEAFLQYENKLIVRTKNDPRVSSNNVNNATTNILVTNIRNAQDLTIYKETAGPRSGRGTIYEIATVEPFTGPFGDIEYYKMLWRRTENQTVGD
Ga0247723_10013719F041188AGGAGMNLTIEELSTKTVMALKAYAKKNNIELFEANTKLEILEILASWIPPEKKEERVEEVNKTKDLIDKVALHSQRNIHMDNLGALKVGYNIVSKEASEKWLTHRLVRIAPPEEVASYYGKA
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Biomedical Sciences Research Center "Alexander Fleming"
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