NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001457

Scaffold Ga0247723_1001457


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001457 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13849
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (65.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F001872Metagenome / Metatranscriptome623Y
F003964Metagenome459Y
F006139Metagenome / Metatranscriptome380Y
F009743Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100145714F006139N/AMDTQVVVALVGGGFAVVVALISKIGYENKKDHGQVHQTLGRIEEKIDNHVENHN
Ga0247723_100145716F001872AGGVATAKANPNARPYTGNSDGASAGPRAGMNEWIKQALAVSNGALWNNGSWGIRDMRGSAGTLSVHATGRAVDLSYRKTEKHQQAGRLNACSFIDVVVANANTLGVECILDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHVEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0247723_10014574F001326AGGMATYSVTNKYLIDNYAVLQLLTPSEIAVGQSITVAGVDATFNGTYTVRALPQYLYIGVDSQGDLLYDYQLPIADQVLFAKTADDVERTAASGTVSYDPVCTWVTTAQVMSYLGITIGNPSDDYTLLTQSVSAGNQFCFRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIETTYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
Ga0247723_10014577F009743AGGAGMKIKLQLKRSADATPEFYWTNLFVITEWERLERRNIQQLSSQPLYSDYCCWMHTILKIKGEQVGDTWRDWISKNPDIEILPIVDETDANPTDAAPTAAN
Ga0247723_10014578F003964GGAGMSEVTATIEIAGLKEALKTLNKIDKTLRTQITRDYRSIVKPVITDANSLIPTGVPLSGMSRNWTTKSGFQMLPWQPGHKQKIAAKINTRAIKEYAGRTTNVGTFSIVYLSATGTMFDMSAQGRLGAALTARYGSRSRVMWKAWQQNENTVNAEMEKLVKHVMDLTNRELM
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