NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001512

Scaffold Ga0247723_1001512


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001512 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13499
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010601Metagenome301Y
F021491Metagenome / Metatranscriptome218Y
F052462Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100151217F010601N/AMLSQWVSGDLELSQELRAGKVPVCIREDYTFYLEFFRGNLWFHIDIKRWSAEVKKGCQRDFALLEDLIGKPIVALIREDDIKLARFAKSFGWSEKCQISLLDGSKAFIYTNMV
Ga0247723_10015127F021491AGGAMSVEKKIDEMVLKYILAAEGKARIMSPPDIGKLVREAMHKGAMLGYDAGMKMSLRAHGNELQIAELTVKELTERVKELEMQMIAQQ
Ga0247723_10015129F052462AGGAGMTRHIGISVPHRRVDEDDDIQTYKRAWVSLTEEQIHECIHYGKGGCEIEQTAKNIELKLKGLNYD
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