NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001581

Scaffold Ga0247723_1001581


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001581 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13166
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (26.47%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011488Metagenome / Metatranscriptome290Y
F012977Metagenome / Metatranscriptome275Y
F018910Metagenome / Metatranscriptome232Y
F033041Metagenome / Metatranscriptome178Y
F044502Metagenome154Y
F092059Metagenome107N
F092066Metagenome / Metatranscriptome107Y
F099314Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100158111F092066AGGAMKIDGGAVEFFQSIPDEMLVEIAFYDRRALERLCVALTLDVQIIVEEAERMKKSKKIKSY
Ga0247723_100158118F044502N/AMTKGFGYVRSLSYIDDMMKEQDKFNGLSKGQVKQIIRRNMITRVKSSKKVYDRKKFKKDLES
Ga0247723_100158119F033041N/AMEKIKINPNFKFTFDTDVDLRRAELTGYIESYDMVRICVKRLDNGNQVDFPIKTREDYFETVASLNERSNEFDMVEIYQDTHMFDMYDYI
Ga0247723_100158122F099314GGAMSEKRGLTGKLLYDFNTAKAVYVKNKDGRFVRVTERDFRSYNGDRWIFEKVNDEWQYTPYNGPLYFHNTNRKCKQPVGEGKIQYMVNKPWVSVRRPHERYLED
Ga0247723_100158123F011488GAGGMSMTNEELIEELYHKAHVKGFFHELHDKVKELTNNHKYKCKHDLVRTAYNELKKIKLAQPSAQN
Ga0247723_100158125F092059AGGMWLQNNFKLVMIGGLTLILGLSFMGARKTHKEIKKGEAQWLLKKKK
Ga0247723_100158130F012977N/AMENTFIYNLSETEYLVFKSQRDCFELFSGHEGSASNSKLATYRGGKWLFEDFNQKKLFWFLFNIYKKDFGKALKQYIRSLNEKPKTYMITCAKRRVDIKITKMKRNVWDWFYGTFYGK
Ga0247723_10015816F018910N/AMKNLITEEFKEKFKTAFARFMNVTIVASTLIAGFGLGYYFQELKMKPQAVNETILNKEVRIAIDSENKLIIMDRKTGQYVIYSDSVGSAIFKMYAAKIASPVSTK
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