NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001604

Scaffold Ga0247723_1001604


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001604 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13011
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F005053Metagenome / Metatranscriptome413Y
F005054Metagenome / Metatranscriptome413Y
F005479Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100160410F005479AGAAGMPELITTIQALKKKEHDAKKFQASLKGVDIGEYEEDKKGGPSFEDIELRAAGINATSNDVVSLQGNFAAQAGFGIGEGLGYSRE
Ga0247723_100160412F005053GGAGGMSMFLPRGSILYIEAKDLLASTPGTTKTWNKVTEHNRSALELSTERIERVVRTSNGTLRKNHIADKKKFQLSWEMLPSYRTLTVDGGWGAEDLRSFYFGDEGKQSFNIRINLAKAGTDQSSSGFESYTVIISSCNFTVVKRGLQPHWNVSLSLDEV
Ga0247723_10016044F005054AGGMAEVLINSQSPIIHKVFWNGDVANADALPTVALYDVTMDPAISPAISPTQLLTTLTSSLDENNPGTYVVNIPYQYTNRNRTLRLDWNYNVGGTNVKKTDEVFVVTPYVDFNHVADMEFSTDSSDPGYKSYKELVLAEKYARKVIEQHTGQNFYLQDEIFVVYGHDSDILPLPSRIAELYYLYARDILLLDNIEEINNWNYDVIVSESGYGIRINRASMLDNTVYIANGMVPSSVNDYGNGVFQSGIPYKVYGRFGWEKVPDDVELAAIELMKDYFAKDTVWRNKYIKKISTFDWDFEYTGEVHTGTGNAYADKLLADYVLTTKVEII
Ga0247723_10016045F001229AGGMNDLIDSVLSMHLDVYRQSETQDSDTGAIVREWSYYKTVACHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTSERLTPREKVTNIRDNSGNVIWHEINFPTETPTVFEVMGTTPVTDPFGKVIAYNSSMKRSENQQIGQ
Ga0247723_10016046F001900GGAGLDNSVLLVQAASGLERMMHANQNGPLKDSTVAQISAYVYYEAAVVSKLTTNKQFQSAFNRIIFDQIDTDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKISEQGLSFRVNYDFLPSRSLVPSSNSRRRHMFIDKASVMEQGNPLVIRPKNADRLVFEVDGETVFMPKGAAVTVKRPGGSAARNQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALKVPSSIKKVQYSFSANTIRSQADSALALSFGGAM
Ga0247723_10016047F000258GGAGGVTANYKLDAMIELRKYLWKELYTRNIFDEDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTLYSTSVADINEIRNYMTDEFRRMDESARDINKWSGFSDKFKFHTIWVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL
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