NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002074

Scaffold Ga0247723_1002074


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002074 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11032
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005740Metagenome / Metatranscriptome391N
F007361Metagenome / Metatranscriptome352N
F066594Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10020741F066594N/AEQLFAKFKSRSIPIQQWSKYLMTPKELALLFQKLEKSNSVLQDIAKTDLGKSGELARKQLGIE
Ga0247723_100207410F005740GAGMKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTQSSGAWIDGEKLTLALPYVQSTKKFTQLTGVIREATNTASRLYEYDATALSELDLAVYDPDETLPQYRRSLLTDRCHNDEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF
Ga0247723_10020748F007361GGAMSVLFSLEADCLGLHEQGATDPDWKRSIEKYRMQYKYVADCSTYGYLPKAVVHDSIKVYVKKDAEASAKECTERFGYEVHLPSVQMLRQYADDWASSNSVMTIGEGELFKLDTLRRVWVHCFHHERAFPEEKAARLVTMNIQRHEPEKVFSIENGNRLVKEVF
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