NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002670

Scaffold Ga0247723_1002670


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002670 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9329
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (59.26%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F010247Metagenome / Metatranscriptome306Y
F013082Metagenome274Y
F013885Metagenome / Metatranscriptome267Y
F020539Metagenome / Metatranscriptome223Y
F024771Metagenome204N
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10026701F006893AGGMANLTTESISESTKKILCDKKLYKDINFFEVPHNKVLLAVIRSITKKSFAQIGKDYKKSWFSIYASVKDTQKNGLKSFTNKVIE
Ga0247723_100267012F013082AGGAGMKTVQQEINRLLLESKTNRYITSNEAPYYYDLCSVEDKSISLDKFYKKFPYHNPDFNSEYWQNQYKKWKDLWKQSTI
Ga0247723_100267015F010247AGGAGMNVQGVVKYVYDNRLTKEGTPNRFPNFKFKVNDQEIVLWSSILHPAIAKGKNVSVTVGASKKNGSLFVLNKPDKTPMIQELPTTKVETKPDTSFNPDELEKELANVAKDFDADLTVETKKPFSKDEMIFCMSLLKSGIESSQIGVTKEEIDLKIKDYKFLFQMNFHN
Ga0247723_100267019F024771GAGMNDKKYIENFNHESYENRTKNYLNISEDRFVQYCTSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKSFPDYFVYAPKEAHKQEQFFVELKNATWEQGKTLAKIKVRDIKRYIYFEQSFTNYHTRFTICWPLSDKIIFKSVDQILKLLPKSQLKCFPNDNIEYFEVQLN
Ga0247723_100267020F032656N/AMNFYLVTYAISFVKVNDESIKEDIAWCRFFDTDSFVNANSFLSQLKTVKKLRITNVEFEVEECNWYDYYEDVSNTIH
Ga0247723_100267026F020539N/AMARTQSEELISLKGHITGIRREVKILGTTVYKLEKRLEKLFWSIFIALGTLSMALLTLFLAK
Ga0247723_100267027F013885N/AKENSMLNYSDIKNYWSKFYADAFEDAKSYWKNYFDLVQNIYKK
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