NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1003982

Scaffold Ga0247723_1003982


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003982 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7165
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001176Metagenome / Metatranscriptome756Y
F003603Metagenome / Metatranscriptome477Y
F034924Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100398218F003603GGGGGMSVPRAIIKGHREKADMKTKEEQVGELLANSLEDHFFNPAALGRYLADQPTYTLDRVMEVVAWVIEKQARRYDREVETNGVLSEGLAIASKLDLVIDKIKEQNELKNVKLPITTKERRGIVKALPNVEEQSYRYSWLHETNNKSNTFVNQGM
Ga0247723_100398220F034924GGAGMPLYRVFGTKYTNYYTIVSAADEYQAAEIANLRPETDWNDIPTDDVIEATDVYLDEDDKVDLQLNI
Ga0247723_100398222F000441AGGAGGMKMSDTYIDDQLNKAQKLLWGGSETENIEAHNIISKLIRDRMEGGEGQND
Ga0247723_100398224F000263AGGMNAEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEQDLADALEQEERSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARSEA
Ga0247723_10039825F001176N/AMSENGTGMATPPNNQPSGAVTSQETARKKPTQGKFRSGITTPRPPTKVDTNRHGIRRETVLGTKKTGKPKKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.