NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1004707

Scaffold Ga0247723_1004707


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1004707 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6362
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003658Metagenome474Y
F008237Metagenome336Y
F012770Metagenome / Metatranscriptome277Y
F079979Metagenome115Y
F099184Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100470710F012770N/AMSIEDSPPHNYCNECEVTFSDSFALVDHMLDEDEQFDPYYLLPSGFKLMLGSLLRFMYNNAENPEQIKLITQSTYVTLFASEMGYELVDELIEDVIVKSALQDFDRDLQELLAEEPKDDEGRE
Ga0247723_100470713F099184GAGVVQVYLTQEEIDSSLAFVDAMRKDKQEYNVTDRKFDAKNTSWAVNLMGHLGEKAVAKVYDVSVDDRVLTGGDEGHDLVINGKTVQVKTTVTKQLIFNSKELFSADYAILVTLIGDRTQPHINSHFIVWGDISREKFLSVCFEKDFGYGVRYVCNLEDLGQELNAFTIA
Ga0247723_100470714F079979AGGMIREEEDDTTQEMRAFVLLELKQETAKLIEKIQAAKVPITDEWTEGVNAGLEWAVRILNKDKSAS
Ga0247723_10047073F003658N/AMLDLTGKAIFTCICGCKMFVVTVMWDEETREVGWYDLRQECKECGAISTAPTPMDWRDE
Ga0247723_10047077F008237GGAGMTLEWSRIEPWQYVVDAVTTEYSRKFNDIESQDIRQALYQWFLEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLPPVLRGEWGVTHKLNLGRPGRPSAPNEGGNLMAMMIEVDYAFWKLPKEDRQVLFLRYAEAMDFPDIAKELEIGSEDAARMRHKRAIRKMINKIGGFKPYRDEDLEEVTQPQE
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