NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1005579

Scaffold Ga0247723_1005579


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1005579 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5642
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F000868Metagenome / Metatranscriptome853Y
F001125Metagenome / Metatranscriptome769Y
F003422Metagenome / Metatranscriptome487Y
F007644Metagenome / Metatranscriptome347Y
F017829Metagenome / Metatranscriptome238Y
F033037Metagenome / Metatranscriptome178Y
F038241Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10055791F033037GGAGMKPEDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTI
Ga0247723_100557910F000311N/AMYFELTAPNRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDKEATGY
Ga0247723_100557911F003422GGAMSVGSCIILPMTNELISSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSNQTKEEKMETTIGSDALHSPAVPYDANLLVTYKVLHGYSDPEYTTSKVASLEWDLHNGRQSQKTASLLQSKINNAKDIIAEAYADSSDQDTLRSIAEALGIELTRTIEFTCSIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA
Ga0247723_100557914F017829AGGMANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGRVNAYVFDNVKKKKTTAMFLDESTVEFNKNLISNAKKVEVGI
Ga0247723_10055792F000263AGGMNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARTL
Ga0247723_10055793F007644N/AMTKSSQFMEYMKLHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNSTNERVY
Ga0247723_10055794F038241AGGAGGMLGYTKEDIDQMSNAVHDAKLFYIRNSNVEQVDQDPLVEGLLKANDFLQGLWAEGYFD
Ga0247723_10055795F000868AGGTGGMSDPHGIIGNYRKGGSMSFLENENEMLIDAIYSEIGEQLVEDWVNSNLDEGQLYADWCVADMSNNNYLKGRFNQFYDLGPTDTYYLQWDEEA
Ga0247723_10055797F001125GGCGGMGDRANFGFRDSKENIVFLYGHWAGYRMLENLADAVQAASPRWNDESYATRIAISNLIKDEWSSETGWGITVNELADNEHKVPIIDWKNKTFTLMEEDLKTVVFSTTLDAFVAKYSSQLSMV
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