NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1005872

Scaffold Ga0247723_1005872


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1005872 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5458
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F017972Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100587210F001477AGGAGGMNNLYTIHPKKSDLILLYEVVDGNGETEWGGENAEHCIQWLSLAPSNSRVLVSAWDSDEEDAHLVGQTIDITAIVRAASL
Ga0247723_100587211F000821GGAGMNREYLEAKIDLCLDLAEKDLKQEEIARAIKNLQRANSALSQLFGFEEENNE
Ga0247723_100587212F003212GAGGMKDKYLVTLEIDTYDGDPRWWDWDIIFPGEDDIKIISSEHKGRVLPKDGEDNE
Ga0247723_10058728F017972GGAGGVRTKHLQLVTSGHSDTMHNRESVRSHFGPVSPGSTTLLAQETLRENQLAQLSELLNSLESVVESLNYKSFTLYDTLNTAIEAVSVALSDTQIESAGTDETT
Ga0247723_10058729F003863GGAGGMESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIISTNSRLTVGVHTRANNTPAFGDPEDAGADEGNDGGEA
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