NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1006277

Scaffold Ga0247723_1006277


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1006277 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5218
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003658Metagenome474Y
F008237Metagenome336Y
F012770Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10062772F012770AGGTGGLSISDEFPHNKCNECKEEFDNSFELIDHLLEDDEEFDPYFILPNGYKLLLGSLMRFLYEHASQPEQVKLITQSTYVTLFASENGYDLIDELVEEMVVKSALEDFDLGLKKLLEEDNNDEGEE
Ga0247723_10062775F008237GGAMNLEWKRIEPWQYVIDAVALEYSRKFGDIDVDDIRQSLYQWFLEHPVKLDTWEAIGEKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLPSVLRGEFTSTAKLNLSGGGKTSAPSEGGNLMAMMIEIDFAYWKLAKDDRKLLFFRYAEVMDFGAIAEELGLSSEDTARMRHKRAIRKLINKIGGFKPYRDEDFASSDMESN
Ga0247723_10062779F003658N/AMFDLQGEPTFACICGCLMFEITVMWDREDRTIGWYDLKQKCKECGTLTTAPTPIDEGI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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