NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1007846

Scaffold Ga0247723_1007846


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1007846 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4481
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039525Metagenome163Y
F044911Metagenome153Y
F058000Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100784610F058000AGGAMTTATEIQAVATVESLLNPIDQLSVLDRQQKALTAQVKSLKDEIANSYGEGKHRGEKYGVRVTIENRKGSIDMEALMAHFGITAEQAEQFRGDSIAVIKVSATA
Ga0247723_10078462F044911AGGAGMTPAELLHKDAARYATNRKLAYIGAMDKKEVDHMSEEALNGRWLAHYEGYREGYWVATGDTKFSTDPAKLKEKNT
Ga0247723_10078466F039525N/AMSETIMSDYIKGFDAGVNCVLTEIQRLEKIGPISLEQLIKHLDPQLDKKTAQKPDKGAS
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