NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1011605

Scaffold Ga0247723_1011605


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1011605 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3364
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029418Metagenome188Y
F031359Metagenome182Y
F080877Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10116053F080877AGGMDDIDRLERDLDPPEPQEPIRIKSWWLSVKWEDGRIEDIALPSEFRQAGKDIENFLDEVEYEYNRDILEHQAQKYGDPDSDY
Ga0247723_10116054F031359N/AMETLIVTIKKEKQYIVEQVIVTGYVIHTNGRKTPFSFNKDDLKPNDLLGIFDGVRRIFK
Ga0247723_10116055F029418AGGAGMTPDEKKRKFEEDLIEVAVAEYYEYVDVHKRTRAEKDAKMFYDAMRLGVIRGINFATNQYMQSLKNFEEAKKDGSNN
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