NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1013453

Scaffold Ga0247723_1013453


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1013453 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3027
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F001781Metagenome / Metatranscriptome635Y
F003603Metagenome / Metatranscriptome477Y
F004666Metagenome / Metatranscriptome428Y
F034924Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_101345310F001460N/AGYEMADIDEMINSVHDAKLFYIRSASNLVDQSLMVNGLEKTVSFLQGLWAEGYFDGYQD
Ga0247723_10134532F003603AGGCGGMKNKEQQIGELLANSVEDHFFNPAALGRYLAEQPTYTIDRVVEVVAWIIEKQARRYEREIQNGGQVSEGLAIAYKLDQVMDKIKDKNTFQHVKLPITDGERKKLIDNLPKVKEQSYRYSWLHETNNGPNATLNVQAVI
Ga0247723_10134533F004666GGAMATKREYLKSKGITVGARGRFSSAANKALEDAASQGVTFEAEKPTPKK
Ga0247723_10134534F034924GAGGLPIYRVFGTKYTNYYTIVSAADEYQAAEIANLRPSTDWDEIPTDDEIEATDVFLDEDTEIDLQLNM
Ga0247723_10134535F001019GAGGMSHYEPSLEILEVAYDCSPGGIRTFEVYDKGDNEVIMDMPIYETDSLTKAVLYCYNLDKDFIVRTYAEWEMRELIADI
Ga0247723_10134536F000441AGGAGGMEMSDIYINDQLNKAQKLLWGGSETENIEAHNIISKLIRDRMSGDEGANESL
Ga0247723_10134537F001781GGAGMKPEDKDKLNECLKILDTTDLGLSMVWLWTWSTINNILEDETFKAKVTQDQMWDHLCEAVQAGHGFSLEYGAEQHHDDVMEWMLNRDYIVDTMFEEDEEEEDGDE
Ga0247723_10134538F000263AGGMNNEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEEKSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNEA
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