NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1016067

Scaffold Ga0247723_1016067


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1016067 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2660
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008496Metagenome / Metatranscriptome332Y
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10160672F008496AGGAGVEFTTSEPTFGIPATVTDYKPEYDPKATIVVRKGYYYGTPSDSKFEVENADDISRAFWRVDALQSTNNSNSLAQGKLKDYLVENFDEIGEEHANAIANIFGMDLSKEVEVEFNVTIKATVSMPINEDVSDLSVYDFDITIESNESNYEILDFDADIDSIDERY
Ga0247723_10160674F043404AGGAMIDTDNPLLQTLADDFVELHNIGGIELEQWETAYKFVKHFYHTEEMVQIIIRGKK
Ga0247723_10160675F016662GAGGMTYLVATTEVIYDEQDLIKMMLDTGEYGIHGHPISHEAMVEFIKDTEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFAKNKLEIK
Ga0247723_10160676F030094GGAGMKLRGIFEGSFESVWSMDVPDYEWKTYLEQNPDFDENDRDDIQEMWDHFKSLGCYDEIDDTVDTDVFMTGIETYGVEVEIN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.